workflow vis-coauthorship-community-evolution template: define-unit -> characterise -> loop(define-unit (windows/communities) -> characterise (flow) -> contextualise -> visualise -> abstract (events) -> assess -> generate-knowledge (evolution) -> characterise (author metrics) -> define-unit (roles) -> visualise -> abstract (stability) -> generate-knowledge (stability) -> characterise (text) -> build-model (topics) -> visualise -> characterise (topic profiles) -> visualise (topic evolution) -> abstract (foci) -> generate-knowledge (foci) -> characterise (overlap) -> visualise (overlap) -> abstract (overlap) -> assess (integration)) -> generate-knowledge (integrated synthesis) description: "Visual analytics workflow for identifying and characterising the intellectual communities of the IEEE VIS co-authorship network, tracking core stability, membership drift, merge/split/dissolution events, and associated research foci across 1990-2024, with an outer refinement loop allowing foundational community-detection choices to be revisited in light of downstream role, topic, and overlap findings" # ============================================================================ # INPUT # ============================================================================ artifact D_papers : entities origin: given internal structure: elementary embedment: {set, time} features: - id: f_authors value structure: list value type: reference description: "Disambiguated author IDs" - id: f_year value structure: atomic value type: temporal - id: f_title value structure: atomic value type: text - id: f_abstract value structure: atomic value type: text - id: f_keywords value structure: list value type: text - id: f_citations value structure: list value type: reference description: "Citation links (provided but not used in this workflow)" description: "3596 IEEE VIS papers (Vis/InfoVis/VAST/SciVis), 1990-2024" # ============================================================================ # PHASE 0: DEFINE AUTHORS AND FULL-PERIOD CO-AUTHORSHIP NETWORK # ============================================================================ transform T_define_authors : intent: define-unit manner: "extract" input: D_papers output: D_authors actor: machine description: "Extract distinct disambiguated authors as analysis units" artifact D_authors : entities internal structure: elementary embedment: {time, relational structure} features: - id: f_active_years value structure: list value type: temporal description: "Distinct disambiguated authors, situated in publication time and in the co-authorship network" transform T_char_coauthor_full : intent: characterise manner: "define-relations (co-authorship, full period)" input: D_authors, D_papers output: F_coauthor_full actor: machine description: "Compute weighted co-authorship relation across the full 1990-2024 period" artifact F_coauthor_full : feature(D_authors) value structure: relational configuration value type: numeric representation form: "weighted co-authorship graph, full period (anchor structure)" # ============================================================================ # SPECIFICATIONS AND PROVENANCE LOG (given at start; consumed/updated throughout) # ============================================================================ artifact S_detection_spec : specification origin: given representation form: "parameter settings (window length, window step, community-detection algorithm and resolution)" description: "Initial choices governing temporal windowing and community-detection granularity" artifact S_role_thresholds : specification origin: given representation form: "parameter settings (tenure and centrality thresholds)" description: "Initial thresholds defining what counts as high tenure, high centrality, and multi-community (boundary-spanning) membership" artifact S_overlap_threshold : specification origin: given representation form: "parameter settings (overlap-weight threshold)" description: "Initial threshold defining what counts as a persistently high-overlap community pair" artifact S_topic_spec : specification origin: given representation form: "parameter settings (number of topics, seed terms)" description: "Initial topic-model configuration" artifact K_provenance_log : knowledge(S_detection_spec, S_topic_spec, S_role_thresholds, S_overlap_threshold) origin: given representation form: "chronological log of specification changes" description: "Initially empty; accumulates a record of each change made to S_detection_spec, S_topic_spec, S_role_thresholds, or S_overlap_threshold during iterative refinement, so revisions can be compared to earlier ones" # ============================================================================ # OUTER LOOP: INTEGRATED REFINEMENT ACROSS ALL DOWNSTREAM PHASES # ============================================================================ loop L_integrated_analysis: purpose: "Ensure that community structure, core stability, research foci, and cross-community overlap together form a coherent account of the VIS intellectual structure; allow foundational temporal-windowing and community-detection choices to be revisited in light of downstream role, topic, or overlap findings, not only in light of the community partition itself" until: "The combined characterisation of communities, their evolution events, core stability/leadership, research foci, and overlap patterns is judged coherent and consistent with domain knowledge of the VIS community" body: # ------------------------------------------------------------------------ # PHASE 3 (INNER LOOP): WINDOWING, COMMUNITY DETECTION, CROSS-TIME MATCHING # ------------------------------------------------------------------------ loop L_community_structure: purpose: "Refine temporal windowing and community-detection resolution until communities are neither too fragmented nor too coarse, and cross-time matches (persistence/merge/split/dissolution) are plausible given domain knowledge" until: "Community partition granularity and cross-time matches are judged adequate" body: transform T_partition_windows : intent: define-unit manner: "time-partitioning with overlapping windows" input: D_papers, S_detection_spec output: D_windows actor: machine description: "Partition 1990-2024 into overlapping time windows as specified by S_detection_spec" artifact D_windows : entities internal structure: episode embedment: time features: - id: f_window_span value structure: atomic value type: temporal description: "Overlapping time windows over the publication period" transform T_char_window_graphs : intent: characterise manner: "define-relations (co-authorship, per window)" input: D_authors, D_papers, D_windows output: F_coauthor_windows actor: machine description: "Compute weighted co-authorship subgraph per window" artifact F_coauthor_windows : feature(D_windows) value structure: relational configuration value type: numeric representation form: "weighted co-authorship graph per window" transform T_anchor_communities : intent: define-unit manner: "cluster-by-similarity (graph community detection, full period)" input: D_authors, F_coauthor_full, S_detection_spec output: D_anchor_communities, F_anchor_membership actor: machine description: "Detect long-term reference communities from the full-period network" artifact D_anchor_communities : entities internal structure: group/cluster embedment: set features: - id: f_size value structure: atomic value type: numeric description: "Long-run reference communities" artifact F_anchor_membership : feature(D_authors) value structure: atomic value type: categorical description: "Anchor-community label per author" transform T_window_communities : intent: define-unit manner: "cluster-by-similarity (graph community detection, per window)" input: D_authors, F_coauthor_windows, S_detection_spec output: D_window_communities, F_window_membership actor: machine description: "Detect communities independently within each windowed snapshot" artifact D_window_communities : entities internal structure: group/cluster embedment: {set, time} features: - id: f_size value structure: atomic value type: numeric - id: f_window value structure: atomic value type: reference description: "Per-window communities of collaborating authors" artifact F_window_membership : feature(D_authors) value structure: atomic value type: categorical description: "Per-window community label per author" transform T_char_overlap : intent: characterise manner: "define-relations (membership overlap across adjacent windows)" input: D_window_communities, F_window_membership output: F_community_flow actor: machine description: "Compute weighted overlap of author membership between communities in adjacent/overlapping windows" artifact F_community_flow : feature(D_window_communities) value structure: relational configuration value type: numeric representation form: "directed weighted graph linking (community, window) pairs by membership overlap" transform T_project_states : intent: contextualise manner: "projection-based (community-state embedding)" input: D_window_communities, F_community_flow output: D_state_space, A_state_projection actor: machine description: "Embed each (community,window) state in 2D by member/topic similarity" artifact D_state_space : entities internal structure: elementary features: - id: f_dimensions value structure: atomic value type: numeric description: "Computed 2D projection space for community-window states" artifact A_state_projection : arrangement(D_window_communities) context: D_state_space principle: "similarity-preserving projection of member/topic vectors" description: "Layout where proximity indicates persistence across windows" transform T_arrange_flow : intent: contextualise manner: "flow/alluvial arrangement based on temporal order and overlap" input: D_window_communities, F_community_flow, D_windows output: A_flow_layout actor: machine description: "Arrange communities along the temporal axis with ribbon widths from overlap weights" artifact A_flow_layout : arrangement(D_window_communities) context: D_windows principle: "alluvial/stream layout ordered by time window, ribbon width by overlap weight" transform T_vis_evolution : intent: visualise manner: "coordinated alluvial diagram and projection scatterplot" input: A_flow_layout, A_state_projection, F_community_flow output: V_evolution actor: machine description: "Render community-flow as alluvial diagram alongside a 2D state-projection scatterplot" artifact V_evolution : visualisation(A_flow_layout, A_state_projection, F_community_flow) layout: "alluvial diagram; 2D projection scatterplot" form: "stream ribbons; coloured points with trails" encoding: "ribbon width/position from F_community_flow; point position from A_state_projection; trails connect matched states" transform T_abstract_events : intent: abstract manner: "perception-and-interpretation of evolution events" input: V_evolution, F_community_flow output: P_evolution_events actor: human description: "Identify and classify evolution events (persist/split/merge/emerge/dissolve) per community trajectory" artifact P_evolution_events : pattern(D_window_communities) representation form: "labelled event templates per community trajectory" transform T_assess_structure : intent: assess manner: "judge community granularity and match plausibility" input: V_evolution, P_evolution_events output: K_structure_quality actor: human description: "Judge whether communities are appropriately resolved and whether identified matches are plausible" artifact K_structure_quality : knowledge(D_window_communities, P_evolution_events) representation form: "quality judgment" if K_structure_quality indicates refinement needed: then: transform T_refine_detection_spec : intent: generate-knowledge manner: "formulate methodological adjustment" input: K_structure_quality, S_detection_spec, K_provenance_log output: S_detection_spec_r, K_provenance_log_r actor: human description: "Adjust window size/step or clustering resolution; append the change to the provenance log" artifact S_detection_spec_r : specification representation form: "updated parameter settings" artifact K_provenance_log_r : knowledge(S_detection_spec_r) representation form: "chronological log of specification changes" description: "Provenance log updated with this window/resolution change" assign: S_detection_spec := S_detection_spec_r K_provenance_log := K_provenance_log_r else: exit loop L_community_structure end loop L_community_structure transform T_knowledge_evolution : intent: generate-knowledge manner: "formulate-statements" input: P_evolution_events, V_evolution output: K_evolution actor: human description: "Formulate conclusions about the number of distinct long-run communities and when/how they merged, split, or dissolved" artifact K_evolution : knowledge(P_evolution_events, D_window_communities) representation form: "statements" # ------------------------------------------------------------------------ # PHASE 4: CORE STABILITY AND LEADERSHIP (with role-classification loop) # ------------------------------------------------------------------------ transform T_char_author_metrics : intent: characterise manner: "compute-statistics (tenure, centrality, cross-membership)" input: D_authors, F_window_membership, F_coauthor_windows output: F_author_metrics actor: machine description: "Compute per-author tenure, within-community centrality per window, and cross-community membership count" artifact F_author_metrics : feature(D_authors) value structure: vector value type: numeric loop L_role_classification: purpose: "Refine role-classification thresholds until core/leader, peripheral, and boundary-spanning assignments are judged consistent with domain knowledge of the VIS community" until: "Classified roles match the analyst's knowledge of known research groups and leaders" body: transform T_classify_authors : intent: define-unit manner: "rule-based classification (core / peripheral / boundary-spanning)" input: D_authors, F_author_metrics, S_role_thresholds output: D_author_roles, F_role_label actor: hybrid description: "Classify authors into roles using current thresholds" artifact D_author_roles : entities internal structure: group/cluster embedment: set description: "Groups of authors sharing the same structural role" artifact F_role_label : feature(D_authors) value structure: atomic value type: categorical transform T_vis_nodetrix : intent: visualise manner: "node-link/matrix hybrid (NodeTrix)" input: D_window_communities, F_coauthor_windows, F_role_label output: V_nodetrix actor: machine description: "Render a selected community-period's dense collaboration core as an adjacency matrix, bridging ties as node-link edges" artifact V_nodetrix : visualisation(D_window_communities, F_coauthor_windows, F_role_label) layout: "hybrid node-link and matrix" form: "adjacency matrix blocks; node-link edges for external ties" encoding: "matrix cell = intra-core edge weight; node colour = role label; external edges = bridging ties" transform T_vis_author_timeline : intent: visualise manner: "scarf-plot / event-sequence timeline per author" input: D_authors, F_window_membership, D_windows output: V_author_timeline actor: machine description: "Render each author as a track with coloured segments indicating community membership per window" artifact V_author_timeline : visualisation(D_authors, F_window_membership, D_windows) layout: "aligned horizontal timelines" form: "coloured segments" encoding: "row = author; horizontal position = time window; colour = community membership" transform T_assess_roles : intent: assess manner: "judge role-classification plausibility" input: V_nodetrix, V_author_timeline, F_role_label output: K_role_quality actor: human description: "Judge whether classified core/leader, peripheral, and boundary-spanning assignments match known VIS leaders and research groups" artifact K_role_quality : knowledge(D_author_roles) representation form: "quality judgment" if K_role_quality indicates refinement needed: then: transform T_refine_role_thresholds : intent: generate-knowledge manner: "formulate methodological adjustment" input: K_role_quality, S_role_thresholds, K_provenance_log output: S_role_thresholds_r, K_provenance_log_r2 actor: human description: "Adjust tenure/centrality thresholds; append the change to the provenance log" artifact S_role_thresholds_r : specification representation form: "updated parameter settings" artifact K_provenance_log_r2 : knowledge(S_role_thresholds_r) representation form: "chronological log of specification changes" assign: S_role_thresholds := S_role_thresholds_r K_provenance_log := K_provenance_log_r2 else: exit loop L_role_classification end loop L_role_classification transform T_abstract_stability : intent: abstract manner: "perception-and-interpretation of stability/leadership patterns" input: V_nodetrix, V_author_timeline, F_author_metrics output: P_stability_patterns actor: human description: "Identify stable cores/leaders per community and members who move between or span multiple communities" artifact P_stability_patterns : pattern(D_authors, D_window_communities) representation form: "labelled roles with textual descriptions" transform T_knowledge_stability : intent: generate-knowledge manner: "formulate-statements" input: P_stability_patterns output: K_stability actor: human description: "Formulate conclusions about core stability and leadership per community" artifact K_stability : knowledge(P_stability_patterns) representation form: "statements" # ------------------------------------------------------------------------ # PHASE 5: RESEARCH FOCI (HUMAN-STEERED TOPIC MODELLING) # ------------------------------------------------------------------------ transform T_char_text_features : intent: characterise manner: "encode (term-document representation)" input: D_papers output: F_text_features actor: machine description: "Build term-document matrix from titles, abstracts, keywords" artifact F_text_features : feature(D_papers) value structure: matrix value type: numeric representation form: "term-document matrix" loop L_topic_refinement: purpose: "Interactively steer the NMF topic model until topics are coherent, non-redundant, and align with recognisable VIS research areas" until: "Topics are judged coherent and interpretable" body: transform T_build_topic_model : intent: build-model manner: "fit-topic-model (NMF)" input: F_text_features, S_topic_spec output: M_topic_model actor: machine description: "Fit NMF topic model using current specification" artifact M_topic_model : model(F_text_features) model type: "topic model" representation form: "matrix factorisation (W,H)" transform T_vis_topics : intent: visualise manner: "topic term/document display" input: M_topic_model output: V_topics actor: machine description: "Display top terms per topic and representative documents" artifact V_topics : visualisation(M_topic_model) layout: "ranked term lists with representative documents" form: "ranked term lists, document excerpts" encoding: "topic weight -> term rank; document-topic weight -> representative document selection" transform T_assess_topics : intent: assess manner: "judge topic coherence and interpretability" input: V_topics output: K_topic_quality actor: human description: "Judge whether topics are coherent, distinct, and align with known VIS research areas" artifact K_topic_quality : knowledge(M_topic_model) representation form: "quality judgment" if K_topic_quality indicates refinement needed: then: transform T_refine_topic_spec : intent: generate-knowledge manner: "formulate methodological adjustment (merge/split/seed topics)" input: K_topic_quality, S_topic_spec, K_provenance_log output: S_topic_spec_r, K_provenance_log_r3 actor: human description: "Merge/split/seed topics; append the change to the provenance log" artifact S_topic_spec_r : specification representation form: "updated parameter settings and seed constraints" artifact K_provenance_log_r3 : knowledge(S_topic_spec_r) representation form: "chronological log of specification changes" assign: S_topic_spec := S_topic_spec_r K_provenance_log := K_provenance_log_r3 else: exit loop L_topic_refinement end loop L_topic_refinement transform T_char_topic_profiles : intent: characterise manner: "aggregate (topic-mixture per community-period)" input: D_window_communities, M_topic_model, D_papers output: F_topic_profiles actor: machine description: "Aggregate topic-mixtures of papers within each community-period into a topic profile" artifact F_topic_profiles : feature(D_window_communities) value structure: vector value type: numeric transform T_vis_topic_evolution : intent: visualise manner: "matrix / small-multiples" input: F_topic_profiles, D_window_communities, D_windows output: V_topic_evolution actor: machine description: "Visualise topic-profile distributions across communities and time" artifact V_topic_evolution : visualisation(F_topic_profiles, D_window_communities, D_windows) layout: "matrix (community x time) / small multiples" form: "stacked bars or heatmap cells" encoding: "rows = communities; columns = time windows; cell content = topic-mixture profile" transform T_abstract_foci : intent: abstract manner: "name-patterns" input: V_topic_evolution, F_topic_profiles output: P_research_foci actor: human description: "Assign descriptive labels to dominant topics per community-period; identify foci shifts over time" artifact P_research_foci : pattern(D_window_communities) representation form: "labelled topic descriptions per community-period" transform T_knowledge_foci : intent: generate-knowledge manner: "formulate-statements" input: P_research_foci output: K_foci actor: human description: "Formulate conclusions about each community's main research foci and their evolution" artifact K_foci : knowledge(P_research_foci) representation form: "statements" # ------------------------------------------------------------------------ # PHASE 6: CROSS-COMMUNITY MEMBERSHIP OVERLAP (with threshold loop) # ------------------------------------------------------------------------ transform T_char_overlap_matrix : intent: characterise manner: "define-relations (pairwise membership overlap within a window)" input: D_window_communities, F_window_membership output: F_overlap_matrix actor: machine description: "For each window, compute a pairwise overlap matrix among communities based on shared authorship" artifact F_overlap_matrix : feature(D_window_communities) value structure: matrix value type: numeric representation form: "pairwise community overlap matrix per window" loop L_overlap_threshold: purpose: "Refine the overlap threshold until the resulting set of high-overlap community pairs is judged meaningful rather than arbitrary" until: "The highlighted set of high-overlap pairs is judged meaningful" body: transform T_vis_overlap : intent: visualise manner: "matrix-plot" input: F_overlap_matrix, S_overlap_threshold output: V_overlap actor: machine description: "Display community x community overlap matrix per window, highlighting pairs above the current threshold" artifact V_overlap : visualisation(F_overlap_matrix, S_overlap_threshold) layout: "matrix grid, selectable per time window" form: "heatmap cells with threshold highlighting" encoding: "cell colour intensity = degree of shared authorship; highlight = above current threshold" transform T_assess_overlap_threshold : intent: assess manner: "judge meaningfulness of highlighted overlap set" input: V_overlap output: K_overlap_threshold_quality actor: human description: "Judge whether the highlighted high-overlap pairs are meaningful (e.g., plausible near-merges) or arbitrary" artifact K_overlap_threshold_quality : knowledge(F_overlap_matrix) representation form: "quality judgment" if K_overlap_threshold_quality indicates refinement needed: then: transform T_refine_overlap_threshold : intent: generate-knowledge manner: "formulate methodological adjustment" input: K_overlap_threshold_quality, S_overlap_threshold, K_provenance_log output: S_overlap_threshold_r, K_provenance_log_r4 actor: human description: "Adjust overlap threshold; append the change to the provenance log" artifact S_overlap_threshold_r : specification representation form: "updated parameter settings" artifact K_provenance_log_r4 : knowledge(S_overlap_threshold_r) representation form: "chronological log of specification changes" assign: S_overlap_threshold := S_overlap_threshold_r K_provenance_log := K_provenance_log_r4 else: exit loop L_overlap_threshold end loop L_overlap_threshold transform T_abstract_overlap : intent: abstract manner: "find-salient-groups" input: V_overlap output: P_overlap_patterns actor: human description: "Identify community pairs with persistently high overlap, candidates for merging or loss of distinctiveness" artifact P_overlap_patterns : pattern(D_window_communities) representation form: "ranked list of high-overlap community pairs" # ------------------------------------------------------------------------ # INTEGRATED ASSESSMENT (governs whether the outer loop re-enters) # ------------------------------------------------------------------------ transform T_assess_integration : intent: assess manner: "judge overall coherence of integrated community characterisation" input: K_evolution, K_stability, K_foci, P_overlap_patterns output: K_integration_quality actor: human description: "Judge whether the combined picture of communities, cores, foci, and overlaps is internally coherent, or whether the underlying temporal-windowing/community-detection resolution itself should be revisited (e.g., persistent high overlap or indistinguishable foci suggesting two 'communities' are really one, or a community is too coarse to reveal known sub-groups)" artifact K_integration_quality : knowledge(K_evolution, K_stability, K_foci, P_overlap_patterns) representation form: "quality judgment" if K_integration_quality indicates that community/window resolution needs revision: then: transform T_revise_detection_spec : intent: generate-knowledge manner: "formulate methodological adjustment based on downstream findings" input: K_integration_quality, S_detection_spec, K_provenance_log output: S_detection_spec_r2, K_provenance_log_r5 actor: human description: "Revise temporal windowing/community-detection resolution based on evidence from role, topic, or overlap analysis; append the change to the provenance log; this triggers re-execution of the entire inner sequence, beginning with L_community_structure" artifact S_detection_spec_r2 : specification representation form: "updated parameter settings" artifact K_provenance_log_r5 : knowledge(S_detection_spec_r2) representation form: "chronological log of specification changes" assign: S_detection_spec := S_detection_spec_r2 K_provenance_log := K_provenance_log_r5 else: exit loop L_integrated_analysis end loop L_integrated_analysis # ============================================================================ # FINAL SYNTHESIS # ============================================================================ transform T_final_synthesis : intent: generate-knowledge manner: "formulate-statements (integrated synthesis)" input: K_evolution, K_stability, K_foci, P_overlap_patterns output: K_findings actor: human description: "Synthesise conclusions across community evolution, core stability/leadership, research foci, and cross-community overlap" artifact K_findings : knowledge(D_window_communities, D_authors) representation form: "statements and structured summary" description: "Integrated findings: number/identity of major communities, core stability and leadership, research foci and their evolution, membership overlap and its change over time, and merge/split/ dissolution events with plausible interpretations"